1F5V

STRUCTURE AND SITE-DIRECTED MUTAGENESIS OF A FLAVOPROTEIN FROM ESCHERICHIA COLI THAT REDUCES NITROCOMPOUNDS. ALTERATION OF PYRIDINE NUCLEOTIDE BINDING BY A SINGLE AMINO ACID SUBSTITUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5281PEG 6000, MES, sodium hydroxide, PEG 400, dioxane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 281.0K
2VAPOR DIFFUSION, SITTING DROP6.5281PEG 6000, MES, sodium hydroxide, PEG 400, dioxane, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 281.0K

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.56α = 75.79
b = 52.86β = 60.71
c = 52.83γ = 61.17
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IICMSINGLE WAVELENGTH
21100IMAGE PLATEFUJI1998-11-20
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200
2SYNCHROTRONPHOTON FACTORY BEAMLINE BL-6APhoton FactoryBL-6A

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTION1.77425340.1890.206RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
x_angle_deg1.69
x_bond_d0.011
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3774
Nucleic Acid Atoms
Solvent Atoms349
Heterogen Atoms62

Software

Software
Software NamePurpose
AMoREphasing
X-PLORrefinement
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling