X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1EO6 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.518MG/ML GABARAP, 50MM TRIS PH8.5, 0.25M NACL,10%(W/V) PEGMONO, pH 8.50
Crystal Properties
Matthews coefficientSolvent content
1.9169

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 30.013α = 90
b = 55.124β = 90
c = 64.418γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-04-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.1SRSPX14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.752297.60.0655.37.611007
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8495.10.2472.27.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1EO61.7541.891045053397.10.2030.2010.23RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it5.405
r_scbond_it3.374
r_mcangle_it2.204
r_angle_other_deg2.107
r_mcbond_it1.264
r_dihedral_angle_3_deg0.956
r_xyhbond_nbd_other0.345
r_symmetry_hbond_other0.339
r_xyhbond_nbd_refined0.292
r_symmetry_hbond_refined0.27
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it5.405
r_scbond_it3.374
r_mcangle_it2.204
r_angle_other_deg2.107
r_mcbond_it1.264
r_dihedral_angle_3_deg0.956
r_xyhbond_nbd_other0.345
r_symmetry_hbond_other0.339
r_xyhbond_nbd_refined0.292
r_symmetry_hbond_refined0.27
r_symmetry_vdw_refined0.269
r_nbd_refined0.234
r_nbd_other0.221
r_metal_ion_refined0.17
r_symmetry_vdw_other0.159
r_chiral_restr0.149
r_nbtor_other0.083
r_bond_refined_d0.025
r_gen_planes_refined0.011
r_gen_planes_other0.005
r_bond_other_d0.001
r_angle_refined_deg
r_dihedral_angle_1_deg
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_metal_ion_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms987
Nucleic Acid Atoms
Solvent Atoms100
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
MOLREPphasing