1PPJ
Bovine cytochrome bc1 complex with stigmatellin and antimycin
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 6.7 | 277 | PEG-3350, JEFFAMINE, GLYCEROL, CACODYLATE, HEXYLGLUCOSIDE , pH 6.7, VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 6.70 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.74 | 54.7 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 128.53 | α = 90 |
b = 168.748 | β = 90 |
c = 231.533 | γ = 90 |
Symmetry | |
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Space Group | P 21 21 21 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | MARRESEARCH | SI(311)MONOCHROMATOR (HORIZONTAL) | 2002-06-26 | M | SINGLE WAVELENGTH | |||||
2 | 1 | x-ray | 100 | CCD | ADSC QUANTUM 4 | TOROIDAL FUCUSING MIRROR | 2002-06-30 | M | SINGLE WAVELENGTH | |||||
3 | 1 | x-ray | 100 | CCD | ADSC QUANTUM 210 | FLAT MIRROR(VERTICAL) | 2002-10-06 | M | SINGLE WAVELENGTH | |||||
4 | 1 | x-ray | 100 | CCD | ADSC QUANTUM 210 | 2002-10-15 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | SSRL BEAMLINE BL9-1 | SSRL | BL9-1 | |
2 | SYNCHROTRON | ALS BEAMLINE 5.0.1 | ALS | 5.0.1 | |
3 | SYNCHROTRON | ALS BEAMLINE 5.0.2 | ALS | 5.0.2 | |
4 | SYNCHROTRON | ALS BEAMLINE 8.2.2 | ALS | 8.2.2 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1,2,3,4 | 2.1 | 250 | 98.1 | 0.149 | 18.689 | 5.63 | 285923 | -3 | 33.5 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1,2,3,4 | 2.1 | 2.15 | 94.3 | 0.879 | 2.819 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | MOLECULAR REPLACEMENT | THROUGHOUT | PDB ENTRIES 1BE3 2BCC | 2.1 | 93.53 | 288448 | 285060 | 14181 | 97.7 | 0.224 | 0.224 | 0.26 | RANDOM | 50.2 |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
12.34 | -3.71 | -8.63 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
c_dihedral_angle_d | 21.8 |
c_scangle_it | 4.3 |
c_scbond_it | 2.83 |
c_mcangle_it | 2.7 |
c_mcbond_it | 1.62 |
c_angle_deg | 1.4 |
c_improper_angle_d | 0.94 |
c_bond_d | 0.006 |
c_bond_d_na | |
c_bond_d_prot |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 31181 |
Nucleic Acid Atoms | |
Solvent Atoms | 1370 |
Heterogen Atoms | 998 |
Software
Software | |
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Software Name | Purpose |
CNS | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |