X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.8292PEG 6000, tert-butanol, sodium acetate, potassium chloride, magnesium chloride, glycerol, MOPS, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
3.968

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 162.439α = 90
b = 76.259β = 108.7
c = 151.164γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-02-04MSINGLE WAVELENGTH
21100CCDADSC QUANTUM 42004-02-04
31100CCDMARRESEARCH2004-01-13
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID290.9792ESRFID29
2SYNCHROTRONESRF BEAMLINE ID290.9792ESRFID29
3SYNCHROTRONBESSY BEAMLINE 14.10.95040BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.64099.80.0920.09224.175334953349-377
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.661000.750.752.86.63518

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRAS + SADTHROUGHOUT2.6405334952546152999.760.242880.242880.241570.28529RANDOM76.45
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-2.11-3.57.58-7.71
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.012
r_dihedral_angle_3_deg18.613
r_dihedral_angle_4_deg17.267
r_dihedral_angle_1_deg7.247
r_scangle_it2.75
r_scbond_it1.636
r_angle_refined_deg1.564
r_mcangle_it1.289
r_angle_other_deg0.887
r_mcbond_it0.695
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.012
r_dihedral_angle_3_deg18.613
r_dihedral_angle_4_deg17.267
r_dihedral_angle_1_deg7.247
r_scangle_it2.75
r_scbond_it1.636
r_angle_refined_deg1.564
r_mcangle_it1.289
r_angle_other_deg0.887
r_mcbond_it0.695
r_nbd_refined0.247
r_symmetry_vdw_other0.236
r_nbd_other0.202
r_xyhbond_nbd_refined0.176
r_symmetry_vdw_refined0.168
r_metal_ion_refined0.132
r_symmetry_hbond_refined0.109
r_mcbond_other0.104
r_nbtor_other0.093
r_chiral_restr0.089
r_xyhbond_nbd_other0.029
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbtor_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7671
Nucleic Acid Atoms
Solvent Atoms40
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing