X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION,SITTING DROP,NANODROP7.42777% PEG 1000, 0.045M HEPES_Na, 0.055M HEPES, 0.01M MANGANESE (II) CHLORIDE, pH 7.4, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.0640.36
237.91

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.958α = 90
b = 130.799β = 90
c = 138.75γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC2003-10-12MSINGLE WAVELENGTH
21x-ray100CCDADSC2003-10-12MMAD
1,21
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.1ALS8.2.1
2SYNCHROTRONALS BEAMLINE 8.2.21.0000, 0.9797, 0.9795ALS8.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.975.2399.10.06313.74.713070032.57
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,21.91.9593.30.5331.92.89022

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.975.23124050657798.930.156180.153840.19959RANDOM24.631
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.14-0.640.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.363
r_dihedral_angle_4_deg21.165
r_dihedral_angle_3_deg13.69
r_scangle_it7.294
r_dihedral_angle_1_deg5.839
r_scbond_it5.308
r_mcangle_it2.688
r_mcbond_it2.058
r_angle_refined_deg1.514
r_angle_other_deg0.846
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.363
r_dihedral_angle_4_deg21.165
r_dihedral_angle_3_deg13.69
r_scangle_it7.294
r_dihedral_angle_1_deg5.839
r_scbond_it5.308
r_mcangle_it2.688
r_mcbond_it2.058
r_angle_refined_deg1.514
r_angle_other_deg0.846
r_mcbond_other0.668
r_symmetry_vdw_other0.259
r_nbd_refined0.218
r_symmetry_hbond_refined0.189
r_nbd_other0.175
r_symmetry_vdw_refined0.168
r_chiral_restr0.089
r_nbtor_other0.083
r_xyhbond_nbd_refined0.053
r_bond_refined_d0.017
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13623
Nucleic Acid Atoms
Solvent Atoms984
Heterogen Atoms138

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
SOLVEphasing
SHARPphasing
REFMACrefinement
CCP4data scaling