1YW1

Structure Of Ytnj From Bacillus Subtilis in complex with FMN

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7	293	1.5M NACITRATE, 0.1M HEPES PH 7.5, soaked in .01M FMN, CRYO: 30% glucose, VAPOR DIFFUSION, temperature 293K

Crystal Properties
Matthews coefficient	Solvent content
3.7	66

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 86.254	α = 90
b = 86.254	β = 90
c = 194.64	γ = 90

Symmetry
Space Group	P 43 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARRESEARCH		2004-12-18	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 31-ID	.979	APS	31-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.8	20	93.3	0.095	13.1	5.57	17468	17468		-3	64.2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.8	2.9	94.2		0.35	2.5		1717

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	2.81	20	17394	17329	899	93.18	0.186	0.18553	0.18221	0.25241	RANDOM	54.603

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.86			2.86		-5.73

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.3
r_dihedral_angle_3_deg	20.16
r_dihedral_angle_4_deg	18.264
r_dihedral_angle_1_deg	7.461
r_scangle_it	5.261
r_scbond_it	3.378
r_mcangle_it	2.066
r_angle_refined_deg	1.926
r_mcbond_it	1.465
r_angle_other_deg	0.829
r_symmetry_vdw_other	0.283
r_mcbond_other	0.259
r_nbd_refined	0.226
r_nbd_other	0.216
r_nbtor_refined	0.199
r_xyhbond_nbd_refined	0.169
r_symmetry_hbond_refined	0.126
r_symmetry_vdw_refined	0.113
r_chiral_restr	0.108
r_nbtor_other	0.103
r_xyhbond_nbd_other	0.04
r_bond_refined_d	0.01
r_gen_planes_refined	0.003
r_bond_other_d
r_gen_planes_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3095
Nucleic Acid Atoms
Solvent Atoms	69
Heterogen Atoms	43

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing