2AQJ
The structure of tryptophan 7-halogenase (PrnA) suggests a mechanism for regioselective chlorination
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 8% PEG20000, 0.1M Mes pH 6.5, 20mM tryptophan, VAPOR DIFFUSION, SITTING DROP, temperature 293 K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.6 | 52.4 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 67.63 | α = 90 |
b = 67.63 | β = 90 |
c = 276.027 | γ = 90 |
Symmetry | |
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Space Group | P 43 21 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | CCD | ADSC QUANTUM 4 | 2003-11-19 | M | MAD | ||||||
2 | 1 | |||||||||||||
3 | 1 |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ESRF BEAMLINE ID14-1 | 0.934, 0.9796, 0.9798, 0.9252 | ESRF | ID14-1 |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | R Sym I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||
1 | 1.8 | 54.66 | 93 | 0.071 | 0.071 | 6.4 | 9.1 | 57128 | 57013 | 2.11 | 2.3 | 25.52 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | R-Sym I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | ||||||||||
1.8 | 1.9 | 93 | 68.8 | 0.337 | 0.337 | 2.3 | 5.2 | 5997 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (All) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||
X-RAY DIFFRACTION | MAD | THROUGHOUT | 1.8 | 54.66 | 57013 | 56573 | 2857 | 93.12 | 0.169 | 0.167 | 0.168 | 0.202 | RANDOM | 29.429 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
0.24 | 0.24 | -0.49 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 31.683 |
r_dihedral_angle_4_deg | 20.862 |
r_dihedral_angle_3_deg | 13.857 |
r_sphericity_free | 6.435 |
r_dihedral_angle_1_deg | 6.099 |
r_scangle_it | 3.371 |
r_sphericity_bonded | 2.48 |
r_scbond_it | 2.287 |
r_mcangle_it | 1.67 |
r_rigid_bond_restr | 1.512 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 4162 |
Nucleic Acid Atoms | |
Solvent Atoms | 393 |
Heterogen Atoms | 69 |
Software
Software | |
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Software Name | Purpose |
SCALA | data scaling |
SOLVE | phasing |
RESOLVE | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
MOSFLM | data reduction |
CCP4 | data scaling |