2AQJ

The structure of tryptophan 7-halogenase (PrnA) suggests a mechanism for regioselective chlorination


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.52938% PEG20000, 0.1M Mes pH 6.5, 20mM tryptophan, VAPOR DIFFUSION, SITTING DROP, temperature 293 K
Crystal Properties
Matthews coefficientSolvent content
2.652.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 67.63α = 90
b = 67.63β = 90
c = 276.027γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42003-11-19MMAD
21
31
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-10.934, 0.9796, 0.9798, 0.9252ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.854.66930.0710.0716.49.157128570132.112.325.52
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.99368.80.3370.3372.35.25997

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.854.665701356573285793.120.1690.1670.1680.202RANDOM29.429
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.240.24-0.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.683
r_dihedral_angle_4_deg20.862
r_dihedral_angle_3_deg13.857
r_sphericity_free6.435
r_dihedral_angle_1_deg6.099
r_scangle_it3.371
r_sphericity_bonded2.48
r_scbond_it2.287
r_mcangle_it1.67
r_rigid_bond_restr1.512
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.683
r_dihedral_angle_4_deg20.862
r_dihedral_angle_3_deg13.857
r_sphericity_free6.435
r_dihedral_angle_1_deg6.099
r_scangle_it3.371
r_sphericity_bonded2.48
r_scbond_it2.287
r_mcangle_it1.67
r_rigid_bond_restr1.512
r_angle_refined_deg1.478
r_mcbond_it1.099
r_nbtor_refined0.317
r_symmetry_vdw_refined0.247
r_nbd_refined0.21
r_xyhbond_nbd_refined0.158
r_symmetry_hbond_refined0.128
r_chiral_restr0.102
r_bond_refined_d0.013
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4162
Nucleic Acid Atoms
Solvent Atoms393
Heterogen Atoms69

Software

Software
Software NamePurpose
SCALAdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling