X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7293PEG 4000, HEPES-sodium, calcium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
3.261.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.218α = 90
b = 101.024β = 97.16
c = 84.925γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-11-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-ID-B0.9810APS14-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.652097.50.0822.23461034610
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.652.73800.5042.12345

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.65202933129331329091.760.237920.237920.232330.28686RANDOM14.504
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.93-1.26-0.25-0.99
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.651
r_scangle_it1.712
r_angle_refined_deg1.456
r_scbond_it0.993
r_angle_other_deg0.816
r_mcangle_it0.629
r_metal_ion_refined0.345
r_mcbond_it0.318
r_symmetry_hbond_refined0.31
r_xyhbond_nbd_refined0.252
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.651
r_scangle_it1.712
r_angle_refined_deg1.456
r_scbond_it0.993
r_angle_other_deg0.816
r_mcangle_it0.629
r_metal_ion_refined0.345
r_mcbond_it0.318
r_symmetry_hbond_refined0.31
r_xyhbond_nbd_refined0.252
r_symmetry_vdw_other0.234
r_nbd_other0.213
r_nbd_refined0.203
r_symmetry_vdw_refined0.114
r_chiral_restr0.098
r_nbtor_other0.079
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.001
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5478
Nucleic Acid Atoms1258
Solvent Atoms181
Heterogen Atoms4

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
AMoREphasing