2CNS
RimI - Ribosomal S18 N-alpha-protein acetyltransferase in complex with acetylCoA.
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | 5 | 15-30% PEG400 (W TO V), 200 MM K/PHOSPHATE, PH 4-5.5 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
3.1 | 60.3 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 133.663 | α = 90 |
b = 133.663 | β = 90 |
c = 192.156 | γ = 120 |
Symmetry | |
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Space Group | H 3 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 93 | IMAGE PLATE | MARRESEARCH RAXIS IV | OSMIC CONFOCAL MAXFLUX OPTICS | M | SINGLE WAVELENGTH |
Radiation Source | |||||
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ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | ROTATING ANODE | RIGAKU RU200B |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1 | 2.5 | 40 | 100 | 0.06 | 42.8 | 19.6 | 21895 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1 | 2.5 | 2.57 | 100 | 0.32 | 10.6 | 19.3 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||||
X-RAY DIFFRACTION | SIRAS | THROUGHOUT | 2.5 | 99.01 | 21895 | 1185 | 100 | 0.206 | 0.203 | 0.262 | RANDOM | 32.15 |
Temperature Factor Modeling | ||||||
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Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
0.67 | 0.33 | 0.67 | -1 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 37.069 |
r_dihedral_angle_4_deg | 18.377 |
r_dihedral_angle_3_deg | 16.469 |
r_dihedral_angle_1_deg | 6.33 |
r_scangle_it | 2.836 |
r_scbond_it | 1.791 |
r_angle_refined_deg | 1.487 |
r_mcangle_it | 1.055 |
r_mcbond_it | 0.608 |
r_nbtor_refined | 0.315 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 3606 |
Nucleic Acid Atoms | |
Solvent Atoms | 115 |
Heterogen Atoms | 168 |
Software
Software | |
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Software Name | Purpose |
CCP4 | model building |
CCP4 | data scaling |
SOLVE | phasing |
RESOLVE | phasing |
AMoRE | phasing |
CCP4 | phasing |
REFMAC | refinement |