Solution NMR Structure of protein of unknown function yegP from E. coli. Ontario Center for Structural Proteomics target EC0640_1_123 Northeast Structural Genomics Consortium Target ET102.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
4 | 3D HNCO | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
5 | 3D HNCA | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
6 | 3D HNCACB | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
7 | 3D HBHA(CO)NH | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
8 | 3D HCCH-TOCSY | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
9 | 3D 1H-15N NOESY | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 | |
10 | 3D 1H-13C NOESY | 0.5 mM [U-100% 13C; U-100% 15N] EC0640 | 90% H2O/10% D2O | 300 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics | Sparky |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | all experiments using non-uniform sampling |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | peak picking | Sparky | Goddard | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | chemical shift assignment | ABACUS | Lemak, Steren, Arrowsmith,Llinas | |
5 | structure solution | ABACUS | Lemak, Steren, Arrowsmith,Llinas | |
6 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
7 | refinement | CNS | BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ | |
8 | data analysis | TALOS | Cornilescu, Delaglio and Bax |