2KV1
Insights into Function, Catalytic Mechanism and Fold Evolution of Mouse Selenoprotein Methionine Sulfoxide Reductase B1 through Structural Analysis
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1-1.5mM [U-98% 13C; U-98% 15N] MsrB1-1, 10mM sodium chloride-2, 20mM sodium phosphate-3, 5mM DTT-4 | 90% H2O/10% D2O | 0.06 | 5.5 | ambient | 298 | |
2 | 3D 1H-13C NOESY | 1-1.5mM [U-98% 13C; U-98% 15N] MsrB1-5, 10mM sodium chloride-6, 20mM sodium phosphate-7, 5mM DTT-8 | 100% D2O | 0.06 | 5.5 | ambient | 298 | |
3 | 3D 1H-13C NOESY | 1-1.5mM [U-98% 13C; U-98% 15N] MsrB1-5, 10mM sodium chloride-6, 20mM sodium phosphate-7, 5mM DTT-8 | 100% D2O | 0.06 | 5.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
2 | Bruker | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 96 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker Biospin |
2 | processing | XwinNMR | 3.5 | Bruker Biospin |
3 | data analysis | XEASY | Bartels et al. | |
4 | structure solution | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |
5 | geometry optimization | Amber | 10 | Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm |
6 | refinement | CYANA | 2.1 | Guntert, Mumenthaler and Wuthrich |