2Q7Q

Crystal structure of Alcaligenes faecalis AADH in complex with p-chlorobenzylamine.


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6292PEG 2000 MME, AMMONIUM SULPHATE, SODIUM CACODYLATE, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 292K
Crystal Properties
Matthews coefficientSolvent content
2.550.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.541α = 90
b = 96.762β = 90
c = 120.13γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.63095.40.0820.93.2135347
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6688.80.4543.112456

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.615134278675795.510.1660.1650.193RANDOM20.771
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.89-0.31-0.58
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.791
r_dihedral_angle_3_deg11.828
r_dihedral_angle_4_deg11.602
r_dihedral_angle_1_deg6.922
r_scangle_it5.9
r_scbond_it4.055
r_mcangle_it2.873
r_mcbond_it2.093
r_angle_refined_deg1.371
r_angle_other_deg0.815
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.791
r_dihedral_angle_3_deg11.828
r_dihedral_angle_4_deg11.602
r_dihedral_angle_1_deg6.922
r_scangle_it5.9
r_scbond_it4.055
r_mcangle_it2.873
r_mcbond_it2.093
r_angle_refined_deg1.371
r_angle_other_deg0.815
r_mcbond_other0.724
r_nbd_refined0.219
r_symmetry_vdw_other0.212
r_nbd_other0.189
r_nbtor_refined0.175
r_symmetry_hbond_refined0.174
r_xyhbond_nbd_refined0.145
r_symmetry_vdw_refined0.136
r_nbtor_other0.093
r_chiral_restr0.087
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7326
Nucleic Acid Atoms
Solvent Atoms1220
Heterogen Atoms18

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction