X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V7JPDB ENTRY 2V7J

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.5pH 7.5
Crystal Properties
Matthews coefficientSolvent content
2.9858.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 68.41α = 90
b = 78.883β = 104.11
c = 93.341γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU-MSCMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.439980.05142.117632
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.42.594.90.162

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2V7J2.490.541763295398.10.1840.1820.213RANDOM2.91
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.390.52-1.752.4
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.122
r_dihedral_angle_4_deg18.561
r_dihedral_angle_3_deg13.878
r_dihedral_angle_1_deg5.123
r_angle_refined_deg1.119
r_scangle_it1.108
r_scbond_it0.639
r_mcangle_it0.375
r_nbtor_refined0.295
r_mcbond_it0.217
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.122
r_dihedral_angle_4_deg18.561
r_dihedral_angle_3_deg13.878
r_dihedral_angle_1_deg5.123
r_angle_refined_deg1.119
r_scangle_it1.108
r_scbond_it0.639
r_mcangle_it0.375
r_nbtor_refined0.295
r_mcbond_it0.217
r_nbd_refined0.191
r_symmetry_vdw_refined0.173
r_xyhbond_nbd_refined0.127
r_symmetry_hbond_refined0.122
r_chiral_restr0.076
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2698
Nucleic Acid Atoms
Solvent Atoms157
Heterogen Atoms59

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling