X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1JROPDB ENTRY 1JRO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.3100 MM TRIS PH 8.3, 8% PEG 8000,7.5MM BACL2, 25MM DTT, 3% ISOPROPANOL
Crystal Properties
Matthews coefficientSolvent content
3.3659.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 92.83α = 109.6
b = 140.56β = 105.89
c = 158.17γ = 101.18
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2008-09-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-2ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.650.6497.80.137.711.96206556
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.6297.30.671.081.94

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1JRO2.650.121962121034397.70.2340.2320.284RANDOM40.69
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.83-0.59-0.84-2.58-1.510.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.832
r_dihedral_angle_4_deg20.337
r_dihedral_angle_3_deg19.192
r_dihedral_angle_1_deg6.342
r_scangle_it2.166
r_angle_refined_deg1.423
r_scbond_it1.291
r_mcangle_it0.855
r_mcbond_it0.449
r_chiral_restr0.09
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.832
r_dihedral_angle_4_deg20.337
r_dihedral_angle_3_deg19.192
r_dihedral_angle_1_deg6.342
r_scangle_it2.166
r_angle_refined_deg1.423
r_scbond_it1.291
r_mcangle_it0.855
r_mcbond_it0.449
r_chiral_restr0.09
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms36372
Nucleic Acid Atoms
Solvent Atoms38
Heterogen Atoms404

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing