X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WUZPDB ENTRY 2WUZ

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.525% PEG 4000, 0.1 M BIS-TRIS, PH 5.5
Crystal Properties
Matthews coefficientSolvent content
2.347

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.993α = 90
b = 101.472β = 111.63
c = 74.729γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray110CCDADSC CCDMIRRORS2009-10-23MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.1ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2724.31000.098.53.64005131.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.272.3955.70.422.42.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2WUZ2.2769.538067194489.10.196770.192770.27339RANDOM23.751
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.170.91-0.050.55
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.902
r_dihedral_angle_3_deg18.953
r_dihedral_angle_4_deg18.536
r_sphericity_free6.576
r_dihedral_angle_1_deg6.51
r_scangle_it3.56
r_scbond_it2.326
r_sphericity_bonded2.308
r_angle_refined_deg1.736
r_rigid_bond_restr1.483
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.902
r_dihedral_angle_3_deg18.953
r_dihedral_angle_4_deg18.536
r_sphericity_free6.576
r_dihedral_angle_1_deg6.51
r_scangle_it3.56
r_scbond_it2.326
r_sphericity_bonded2.308
r_angle_refined_deg1.736
r_rigid_bond_restr1.483
r_mcangle_it1.463
r_mcbond_it0.851
r_chiral_restr0.117
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6943
Nucleic Acid Atoms
Solvent Atoms429
Heterogen Atoms130

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
REFMACphasing