X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52770.1 M Na HEPES, 0.25 M NaCl, 0.15 M Li2SO4, 19% PEG 4000, 0.2% n-heptyl b-D-thioglucopyranoside, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.5351.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 61.2α = 109.3
b = 92β = 90.8
c = 108γ = 90.1
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2008-03-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.98089SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.150970.07413.513.912986712595629.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1595.10.3664.73.98703

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT2.119.95129867120465629597.80.242150.240480.27431RANDOM33.179
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.33-0.13-0.680.372.181.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.998
r_dihedral_angle_3_deg15.126
r_dihedral_angle_4_deg14.906
r_dihedral_angle_1_deg7.06
r_scangle_it0.991
r_mcangle_it0.786
r_angle_refined_deg0.64
r_scbond_it0.623
r_mcbond_it0.444
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.998
r_dihedral_angle_3_deg15.126
r_dihedral_angle_4_deg14.906
r_dihedral_angle_1_deg7.06
r_scangle_it0.991
r_mcangle_it0.786
r_angle_refined_deg0.64
r_scbond_it0.623
r_mcbond_it0.444
r_nbtor_refined0.302
r_nbd_refined0.185
r_symmetry_hbond_refined0.177
r_symmetry_vdw_refined0.169
r_xyhbond_nbd_refined0.127
r_chiral_restr0.052
r_bond_refined_d0.004
r_gen_planes_refined0.003
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14612
Nucleic Acid Atoms
Solvent Atoms806
Heterogen Atoms395

Software

Software
Software NamePurpose
XDSdata scaling
Cootmodel building
REFMACrefinement
XDSdata reduction
XSCALEdata scaling