X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.4298Tris buffer, Ammonium Sulfate, Glycerol, BeCl2, NaF, MnCl2, pH 8.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
4.1370.21

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.564α = 90
b = 53.408β = 90
c = 161.839γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKU RAXIS IV++2007-10-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0130.9799.70.07924.9514.731825
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.012.0899.70.4274.63125

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT2.0130.9731770160799.650.180.1780.21RANDOM28.524
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.560.31-0.87
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.963
r_dihedral_angle_3_deg14.166
r_dihedral_angle_4_deg8.865
r_dihedral_angle_1_deg6.046
r_scangle_it3.405
r_scbond_it2.275
r_angle_refined_deg1.546
r_mcangle_it1.204
r_mcbond_it1.035
r_angle_other_deg1.022
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.963
r_dihedral_angle_3_deg14.166
r_dihedral_angle_4_deg8.865
r_dihedral_angle_1_deg6.046
r_scangle_it3.405
r_scbond_it2.275
r_angle_refined_deg1.546
r_mcangle_it1.204
r_mcbond_it1.035
r_angle_other_deg1.022
r_symmetry_vdw_other0.276
r_nbd_refined0.214
r_symmetry_hbond_refined0.204
r_nbd_other0.196
r_mcbond_other0.196
r_nbtor_refined0.169
r_xyhbond_nbd_refined0.166
r_chiral_restr0.104
r_symmetry_vdw_refined0.095
r_nbtor_other0.087
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1962
Nucleic Acid Atoms
Solvent Atoms348
Heterogen Atoms55

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction