3HZ3

Lactobacillus reuteri N-terminally truncated glucansucrase GTF180(D1025N)-sucrose complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293PEG 3350, BIS-TRIS propane buffer, pH 6.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5451.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 57.782α = 107.13
b = 66.233β = 101.37
c = 82.724γ = 85.4
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2006-05-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM160.9795ESRFBM16

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.225096.20.05515.63.954782
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.222.3489.30.2534.43.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.222051955272296.270.195310.192830.2434RANDOM57.108
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.16-1.36-1.070.320.38-0.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.677
r_dihedral_angle_4_deg15.2
r_dihedral_angle_3_deg15.178
r_dihedral_angle_1_deg6.417
r_scangle_it2.676
r_mcbond_other2.574
r_scbond_it1.772
r_angle_refined_deg1.419
r_mcangle_it0.972
r_mcbond_it0.556
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.677
r_dihedral_angle_4_deg15.2
r_dihedral_angle_3_deg15.178
r_dihedral_angle_1_deg6.417
r_scangle_it2.676
r_mcbond_other2.574
r_scbond_it1.772
r_angle_refined_deg1.419
r_mcangle_it0.972
r_mcbond_it0.556
r_symmetry_hbond_refined0.228
r_symmetry_vdw_other0.208
r_xyhbond_nbd_refined0.199
r_nbd_other0.192
r_nbd_refined0.189
r_nbtor_refined0.184
r_xyhbond_nbd_other0.173
r_metal_ion_refined0.152
r_chiral_restr0.096
r_nbtor_other0.087
r_symmetry_vdw_refined0.075
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_gen_planes_other0.001
r_bond_other_d
r_angle_other_deg
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7960
Nucleic Acid Atoms
Solvent Atoms244
Heterogen Atoms47

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
XDSdata reduction
XDSdata scaling