Experiment: 3LJ1

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2RIO	PDB ENTRY 2RIO

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	hanging drop		298	hanging drop, temperature 298K

Crystal Properties
Matthews coefficient	Solvent content
3.95	68.83

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 125.55	α = 90
b = 125.55	β = 90
c = 174.39	γ = 120

Symmetry
Space Group	P 32 1 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray		CCD	ADSC QUANTUM 315		2008-11-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 24-ID-C	0.979	APS	24-ID-C

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.33	51.264	98.4	0.124		4.6	22895	22895

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 2RIO	3.33	51.26	22877	1181	98.27	0.264	0.263	0.284	RANDOM	63.914

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.78	0.89		1.78		-2.67

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.508
r_dihedral_angle_4_deg	17.153
r_dihedral_angle_3_deg	14.773
r_dihedral_angle_1_deg	8.613
r_angle_other_deg	4.309
r_angle_refined_deg	1.507
r_scangle_it	0.736
r_scbond_it	0.426
r_mcangle_it	0.223
r_mcbond_it	0.111

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	35.508
r_dihedral_angle_4_deg	17.153
r_dihedral_angle_3_deg	14.773
r_dihedral_angle_1_deg	8.613
r_angle_other_deg	4.309
r_angle_refined_deg	1.507
r_scangle_it	0.736
r_scbond_it	0.426
r_mcangle_it	0.223
r_mcbond_it	0.111
r_chiral_restr	0.093
r_gen_planes_other	0.012
r_bond_refined_d	0.007
r_gen_planes_refined	0.007
r_bond_other_d
r_mcbond_other

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6292
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	56

Software

Software
Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MOSFLM	data reduction
PHASER	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.