X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2WSC 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP627722.5mM MES BIS-TRIS, 10mM SUCCINIC ACID, 6% PEG6000, 0.015% DTM, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
4.1670.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 120.655α = 90
b = 189.086β = 91.24
c = 129.388γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMIRRORS2009-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-20.873ESRFID23-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.33082447

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2WSC3.33082447434499.460.3510.3490.383RANDOM23.073
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.62-1.43-7.819.37
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.197
r_dihedral_angle_1_deg26.852
r_dihedral_angle_3_deg25.575
r_dihedral_angle_4_deg22.066
r_angle_refined_deg4.757
r_scangle_it4.412
r_scbond_it3.568
r_mcangle_it0.612
r_chiral_restr0.515
r_mcbond_it0.416
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.197
r_dihedral_angle_1_deg26.852
r_dihedral_angle_3_deg25.575
r_dihedral_angle_4_deg22.066
r_angle_refined_deg4.757
r_scangle_it4.412
r_scbond_it3.568
r_mcangle_it0.612
r_chiral_restr0.515
r_mcbond_it0.416
r_bond_refined_d0.023
r_gen_planes_refined0.015
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms24732
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms11638

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
DENZOdata reduction
SCALEPACKdata scaling