X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2IEEPDB ENTRY 2IEE

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
13.520-30% PEG 3350, 100 MM NA-CITRATE, PH 3.5
Crystal Properties
Matthews coefficientSolvent content
2.3146.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.09α = 90
b = 99.83β = 91.5
c = 128.83γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.1BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.324899.70.119.863.881031-340.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.322.3899.30.582.453.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2IEE2.32487697840521000.219810.217370.26671RANDOM26.238
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.240.31-0.291.55
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.689
r_dihedral_angle_4_deg21.839
r_dihedral_angle_3_deg17.558
r_dihedral_angle_1_deg6.121
r_scangle_it3.499
r_scbond_it2.1
r_angle_refined_deg1.564
r_mcangle_it1.241
r_angle_other_deg1.068
r_mcbond_it0.659
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.689
r_dihedral_angle_4_deg21.839
r_dihedral_angle_3_deg17.558
r_dihedral_angle_1_deg6.121
r_scangle_it3.499
r_scbond_it2.1
r_angle_refined_deg1.564
r_mcangle_it1.241
r_angle_other_deg1.068
r_mcbond_it0.659
r_mcbond_other0.161
r_chiral_restr0.089
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14043
Nucleic Acid Atoms
Solvent Atoms579
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing