4FON
High Energy Remote SAD structure solution of Proteinase K from the 37.8 keV Tellurium K edge
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 295 | 1 uL 60 mg/mL protein + 1 uL reservoir (1 mL saturated potassium tellurate), cryo-solution: 70% crystallization solution, 30% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 295K |
Crystal Properties | |
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Matthews coefficient | Solvent content |
2.06 | 40.3 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 68.18 | α = 90 |
b = 68.18 | β = 90 |
c = 102.688 | γ = 90 |
Symmetry | |
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Space Group | P 43 21 2 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | IMAGE PLATE | MARRESEARCH | 2011-11-21 | L | LAUE | ||||||
2 | 1 | x-ray | 100 | CCD | ADSC QUANTUM 270 | Rh coated toroidal focusing mirror | 2011-11-10 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ESRF BEAMLINE ID15C | 0.328 | ESRF | ID15C |
2 | SYNCHROTRON | NSLS BEAMLINE X6A | 1.377 | NSLS | X6A |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||||
1,2 | 1.05 | 12 | 98.4 | 0.099 | 13.4 | 7.7 | 111263 | 111263 | 2 | 2 | 4.1 |
Highest Resolution Shell | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||||
1,2 | 1.05 | 1.07 | 99.6 | 0.66 | 2.1 | 7.6 | 5538 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (Observed) | R-Work | R-Free | R-Free Selection Details | Mean Isotropic B | |||||||
X-RAY DIFFRACTION | SAD | THROUGHOUT | 1.05 | 11.89 | 105533 | 5568 | 98.33 | 0.11286 | 0.11191 | 0.13073 | RANDOM | 6.44 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
-0.03 | -0.03 | 0.06 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_dihedral_angle_2_deg | 36.197 |
r_sphericity_free | 20.902 |
r_dihedral_angle_4_deg | 14.59 |
r_dihedral_angle_3_deg | 10.941 |
r_dihedral_angle_1_deg | 6.205 |
r_sphericity_bonded | 4.555 |
r_angle_refined_deg | 1.342 |
r_rigid_bond_restr | 1.074 |
r_angle_other_deg | 0.923 |
r_chiral_restr | 0.085 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 2032 |
Nucleic Acid Atoms | |
Solvent Atoms | 412 |
Heterogen Atoms | 25 |
Software
Software | |
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Software Name | Purpose |
SPEC | data collection |
SHELXS | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |