X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5277100 mM HEPES pH 7.5, 3.5% PEG 8000, 28% MPD, 300 mM (NH4)2HPO4
Crystal Properties
Matthews coefficientSolvent content
3.2862.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.806α = 78.13
b = 91.151β = 88.46
c = 100.266γ = 88.5
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2013-06-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.97937APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.833097.80.0956.74183439
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.831.8696.40.6313.98966

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.8430174210922996.850.1550.15410.1733RANDOM26.422
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.71-0.240.13-0.220.2-1.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.364
r_dihedral_angle_4_deg13.245
r_dihedral_angle_3_deg11.529
r_dihedral_angle_1_deg5.816
r_mcangle_it2.04
r_angle_refined_deg1.441
r_mcbond_it1.271
r_mcbond_other1.271
r_angle_other_deg1.168
r_chiral_restr0.085
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.364
r_dihedral_angle_4_deg13.245
r_dihedral_angle_3_deg11.529
r_dihedral_angle_1_deg5.816
r_mcangle_it2.04
r_angle_refined_deg1.441
r_mcbond_it1.271
r_mcbond_other1.271
r_angle_other_deg1.168
r_chiral_restr0.085
r_bond_refined_d0.01
r_gen_planes_refined0.008
r_bond_other_d0.006
r_gen_planes_other0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms12076
Nucleic Acid Atoms
Solvent Atoms1065
Heterogen Atoms476

Software

Software
Software NamePurpose
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing
Cootmodel building
REFMACrefinement
PDB_EXTRACTdata extraction