Experiment: 4X96

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	4X90

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		277	100 mM Na acetate pH 5.0, 13% isopropanol, and 200 mM CaCl2

Crystal Properties
Matthews coefficient	Solvent content
13.89	87

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 367.258	α = 90
b = 367.258	β = 90
c = 187.069	γ = 120

Symmetry
Space Group	H 3

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MARMOSAIC 300 mm CCD		2014-02-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 21-ID-D	0.97857	APS	21-ID-D

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	8.69	30	98.8	0.189	0.21	0.093	3.3	5.1		7324

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	8.7	8.85	94.8		0.529	0.592	0.264	0.794		4.8	365

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	4X90	8.69	30	6954	367	94.22	0.2105	0.2096	0.2286	RANDOM	359.555

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.92	-0.96		-1.92		6.22

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.359
r_dihedral_angle_3_deg	14.454
r_mcangle_it	12.791
r_dihedral_angle_4_deg	12.762
r_mcbond_it	6.938
r_mcbond_other	6.937
r_dihedral_angle_1_deg	5.729
r_angle_refined_deg	1.17
r_angle_other_deg	0.866
r_chiral_restr	0.086

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.359
r_dihedral_angle_3_deg	14.454
r_mcangle_it	12.791
r_dihedral_angle_4_deg	12.762
r_mcbond_it	6.938
r_mcbond_other	6.937
r_dihedral_angle_1_deg	5.729
r_angle_refined_deg	1.17
r_angle_other_deg	0.866
r_chiral_restr	0.086
r_bond_refined_d	0.006
r_gen_planes_refined	0.006
r_gen_planes_other	0.003
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	12044
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	368

Software

Software
Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.