X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4XE3 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP2944M HCOONa
Crystal Properties
Matthews coefficientSolvent content
3.1160.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 247.6α = 90
b = 110.8β = 129.6
c = 159.1γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 2M2014-06-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.20.918409BESSY14.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6212099.50.113.636.0998805
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.622.78970.86.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4XE32.6212093879493299.60.2110.2080.258RANDOM55.81
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-3.13-0.852.041.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.818
r_dihedral_angle_3_deg19.049
r_dihedral_angle_4_deg17.555
r_long_range_B_refined6.513
r_long_range_B_other6.487
r_dihedral_angle_1_deg5.672
r_mcangle_other4.003
r_mcangle_it4.002
r_scangle_other3.672
r_mcbond_it2.413
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.818
r_dihedral_angle_3_deg19.049
r_dihedral_angle_4_deg17.555
r_long_range_B_refined6.513
r_long_range_B_other6.487
r_dihedral_angle_1_deg5.672
r_mcangle_other4.003
r_mcangle_it4.002
r_scangle_other3.672
r_mcbond_it2.413
r_mcbond_other2.41
r_scbond_it2.134
r_scbond_other2.134
r_angle_refined_deg1.379
r_angle_other_deg0.995
r_chiral_restr0.075
r_bond_refined_d0.009
r_gen_planes_refined0.006
r_gen_planes_other0.004
r_bond_other_d0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms18447
Nucleic Acid Atoms
Solvent Atoms565
Heterogen Atoms420

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing