X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1HQL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5293PROTEIN CONCENTRATION 5-8 MG/ML IN 0.05 M HEPES BUFFER (pH 7.5) AND 0.15 M NACL, PRECIPITANT: 12% (W/W) PEG8000, 8% (W/V) ETHYLENE GLYCOL, 0.1 M HEPES (pH 7.5), DROPLETS RATIO: 1:1
Crystal Properties
Matthews coefficientSolvent content
2.4950.58

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.991α = 90
b = 58.004β = 90
c = 190.546γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2015-09-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0000APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.435095.50.0598.44.790961
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.431.4563.90.4880.7592.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1HQL1.433081670425789.840.11860.11640.1605RANDOM17.109
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.2-0.390.59
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.788
r_dihedral_angle_2_deg33.177
r_dihedral_angle_4_deg18.571
r_dihedral_angle_3_deg12.89
r_sphericity_bonded11.627
r_dihedral_angle_1_deg7.285
r_rigid_bond_restr5.757
r_mcangle_it2.391
r_mcbond_it2.294
r_mcbond_other2.225
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free33.788
r_dihedral_angle_2_deg33.177
r_dihedral_angle_4_deg18.571
r_dihedral_angle_3_deg12.89
r_sphericity_bonded11.627
r_dihedral_angle_1_deg7.285
r_rigid_bond_restr5.757
r_mcangle_it2.391
r_mcbond_it2.294
r_mcbond_other2.225
r_angle_refined_deg1.986
r_angle_other_deg1.281
r_chiral_restr0.136
r_bond_refined_d0.021
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3622
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data collection
HKL-3000data scaling
PDB_EXTRACTdata extraction
HKL-3000data reduction
PHASERphasing