X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3OW8FFAS03/SCWRL models based on PDB entries 3ow8, 2hes, 3dm0
experimental modelPDB 2HESFFAS03/SCWRL models based on PDB entries 3ow8, 2hes, 3dm0
experimental modelPDB 3DM0FFAS03/SCWRL models based on PDB entries 3ow8, 2hes, 3dm0

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION5.529115% PEG4000, 0.2M ammonium acetate, 0.1M sodium citrate
Crystal Properties
Matthews coefficientSolvent content
2.653.1

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 60.811α = 90
b = 124.407β = 119.49
c = 61.034γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2011-08-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97918APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6548.7198.90.0910.1070.0540.99710.83.893484
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.651.6897.81.0151.1790.5990.4951.33.84501

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTFFAS03/SCWRL models based on PDB entries 3ow8, 2hes, 3dm01.6548.4788765468498.760.1650.16350.194521.435
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.430.63-0.6-0.33
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.549
r_dihedral_angle_4_deg16.545
r_dihedral_angle_3_deg11.664
r_dihedral_angle_1_deg6.512
r_mcangle_it3.331
r_mcbond_it2.266
r_mcbond_other2.244
r_angle_refined_deg1.594
r_angle_other_deg0.972
r_chiral_restr0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.549
r_dihedral_angle_4_deg16.545
r_dihedral_angle_3_deg11.664
r_dihedral_angle_1_deg6.512
r_mcangle_it3.331
r_mcbond_it2.266
r_mcbond_other2.244
r_angle_refined_deg1.594
r_angle_other_deg0.972
r_chiral_restr0.1
r_bond_refined_d0.017
r_gen_planes_refined0.008
r_bond_other_d0.003
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5298
Nucleic Acid Atoms
Solvent Atoms420
Heterogen Atoms55

Software

Software
Software NamePurpose
REFMACrefinement
Aimlessdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction
PHASERphasing
MOLREPphasing