X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1H4W 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52980.1 M HEPES 2 M Ammonium Sulfate 2 % PEG-400
Crystal Properties
Matthews coefficientSolvent content
2.1943.86

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.916α = 90
b = 64.443β = 90
c = 80.675γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2014-08-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X251.1NSLSX25

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.255098.40.04511.911.158825
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.251.2782.30.2220.9544.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1H4W1.2532.2455799296098.290.11880.11780.1372RANDOM11.612
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.750.65-1.4
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free50.57
r_dihedral_angle_2_deg36.422
r_sphericity_bonded13.885
r_dihedral_angle_3_deg12.146
r_dihedral_angle_4_deg11.96
r_rigid_bond_restr6.774
r_dihedral_angle_1_deg6.622
r_angle_refined_deg2.174
r_angle_other_deg1.025
r_chiral_restr0.153
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_free50.57
r_dihedral_angle_2_deg36.422
r_sphericity_bonded13.885
r_dihedral_angle_3_deg12.146
r_dihedral_angle_4_deg11.96
r_rigid_bond_restr6.774
r_dihedral_angle_1_deg6.622
r_angle_refined_deg2.174
r_angle_other_deg1.025
r_chiral_restr0.153
r_bond_refined_d0.025
r_gen_planes_refined0.012
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1702
Nucleic Acid Atoms
Solvent Atoms226
Heterogen Atoms32

Software

Software
Software NamePurpose
HKL-2000data scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction