X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6JUL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6295PEG 2KMME 12%, NaCl 0.2 mM, Bis Tris Propane pH 6.0.
Crystal Properties
Matthews coefficientSolvent content
2.6152.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 54.02α = 90
b = 80.96β = 90
c = 211.61γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 S 6M2018-06-27MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID30B0.9795ESRFID30B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.78105.8199.80.1190.99810.99.889850
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.781.8899.70.5310

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6JUL1.7880.9685085462699.710.197240.195240.23377RANDOM32.77
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.510.260.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.361
r_dihedral_angle_4_deg14.967
r_dihedral_angle_3_deg14.052
r_long_range_B_refined7.168
r_long_range_B_other7.028
r_dihedral_angle_1_deg6.234
r_scangle_other3.802
r_mcangle_it2.549
r_mcangle_other2.549
r_scbond_it2.472
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.361
r_dihedral_angle_4_deg14.967
r_dihedral_angle_3_deg14.052
r_long_range_B_refined7.168
r_long_range_B_other7.028
r_dihedral_angle_1_deg6.234
r_scangle_other3.802
r_mcangle_it2.549
r_mcangle_other2.549
r_scbond_it2.472
r_scbond_other2.471
r_angle_refined_deg2.245
r_mcbond_it1.572
r_mcbond_other1.572
r_angle_other_deg1.26
r_chiral_restr0.163
r_bond_refined_d0.026
r_gen_planes_refined0.014
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5292
Nucleic Acid Atoms882
Solvent Atoms694
Heterogen Atoms60

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
Cootmodel building
PHASERphasing