X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP9.32910.1 M CHES, 40% PEG600
Crystal Properties
Matthews coefficientSolvent content
2.3442.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.493α = 90
b = 78.013β = 90.54
c = 86.902γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRAYONIX MX300-HS2018-09-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-BM1.0APS22-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7444.4999.90.0850.0330.99554.17.56096123.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.741.77990.3830.1580.9384.66.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1.7444.4957876306499.670.1610.160.188RANDOM30.9
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.29-0.12-1.35-1.94
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.339
r_dihedral_angle_4_deg15.908
r_dihedral_angle_3_deg11.395
r_dihedral_angle_1_deg5.781
r_long_range_B_refined4.576
r_long_range_B_other4.576
r_scangle_other3.315
r_scbond_it2.053
r_scbond_other2.053
r_mcangle_it2.025
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.339
r_dihedral_angle_4_deg15.908
r_dihedral_angle_3_deg11.395
r_dihedral_angle_1_deg5.781
r_long_range_B_refined4.576
r_long_range_B_other4.576
r_scangle_other3.315
r_scbond_it2.053
r_scbond_other2.053
r_mcangle_it2.025
r_mcangle_other2.025
r_angle_refined_deg1.371
r_mcbond_it1.338
r_mcbond_other1.338
r_angle_other_deg0.834
r_chiral_restr0.076
r_bond_refined_d0.007
r_bond_other_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4952
Nucleic Acid Atoms
Solvent Atoms373
Heterogen Atoms96

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
FFTphasing