7K3C
SGMGGIT segment 58-64 from Keratin-8
X-RAY DIFFRACTION
Crystallization
Crystalization Experiments | ||||
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ID | Method | pH | Temperature | Details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.2 | 298 | 0.1 M phoshate/citrate pH 4.2, 40% ethanol, 5% PEG 1000 |
Crystal Properties | |
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Matthews coefficient | Solvent content |
1.56 | 21.28 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 8.36 | α = 90 |
b = 51.61 | β = 109.096 |
c = 9.53 | γ = 90 |
Symmetry | |
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Space Group | P 1 21 1 |
Diffraction
Diffraction Experiment | ||||||||||||||
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ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 100 | PIXEL | DECTRIS EIGER X 16M | 2018-08-09 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | APS BEAMLINE 24-ID-E | 0.97918 | APS | 24-ID-E |
Data Collection
Overall | |||||||||||||||||||
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ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | R Merge I (Observed) | Rrim I (All) | CC (Half) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | ||||||
1 | 1.1 | 25.81 | 93.3 | 0.182 | 0.224 | 0.955 | 3.33 | 2.636 | 2926 | 10.188 |
Highest Resolution Shell | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (All) | Percent Possible (Observed) | R Merge I (Observed) | Rrim I (All) | CC (Half) | Mean I Over Sigma (Observed) | Redundancy | Number Unique Reflections (All) | |||||||||
1 | 1.1 | 1.13 | 62.7 | 0.351 | 0.462 | 0.946 | 1.39 | 2.007 |
Refinement
Statistics | |||||||||||||||||||
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Diffraction ID | Structure Solution Method | Cross Validation method | Resolution (High) | Resolution (Low) | Number Reflections (Observed) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Factor (All) | R-Work | R-Free | Mean Isotropic B | ||||||||
X-RAY DIFFRACTION | AB INITIO PHASING | FREE R-VALUE | 1.1 | 25.805 | 2926 | 293 | 93.782 | 0.158 | 0.1562 | 0.1694 | 6.298 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
1.396 | -0.326 | -0.316 | -0.688 |
RMS Deviations | |
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Key | Refinement Restraint Deviation |
r_rigid_bond_restr | 8.451 |
r_dihedral_angle_3_deg | 6.783 |
r_dihedral_angle_1_deg | 2.65 |
r_scangle_it | 2.539 |
r_scangle_other | 2.516 |
r_scbond_it | 2.283 |
r_scbond_other | 2.258 |
r_angle_refined_deg | 1.815 |
r_angle_other_deg | 1.613 |
r_lrange_other | 1.277 |
Non-Hydrogen Atoms Used in Refinement | |
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Non-Hydrogen Atoms | Number |
Protein Atoms | 84 |
Nucleic Acid Atoms | |
Solvent Atoms | 5 |
Heterogen Atoms | 16 |
Software
Software | |
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Software Name | Purpose |
XDS | data reduction |
XSCALE | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
SHELXD | phasing |