X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4PSY 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP277.1518% to 20% PEG4000 or 8000, 0.2M ammonium sulfate and 2mM DTT.
Crystal Properties
Matthews coefficientSolvent content
3.7266.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.47α = 90
b = 113.397β = 90
c = 216.578γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2020-08-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS-II BEAMLINE 17-ID-10.9201NSLS-II17-ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.0456.7698.70.2890.3180.1270.943.961568045.81
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.043.2598.10.8630.9660.4160.3451.95.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4PSY3.0456.761491373497.920.21810.21490.2823RANDOM51.221
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.55-1.57-0.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.009
r_dihedral_angle_3_deg19.648
r_dihedral_angle_4_deg17.511
r_dihedral_angle_1_deg7.573
r_angle_refined_deg1.474
r_angle_other_deg1.124
r_chiral_restr0.056
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_bond_other_d0.001
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.009
r_dihedral_angle_3_deg19.648
r_dihedral_angle_4_deg17.511
r_dihedral_angle_1_deg7.573
r_angle_refined_deg1.474
r_angle_other_deg1.124
r_chiral_restr0.056
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3768
Nucleic Acid Atoms
Solvent Atoms13
Heterogen Atoms249

Software

Software
Software NamePurpose
MOSFLMdata reduction
Aimlessdata scaling
MrBUMPphasing
REFMACrefinement
PDB_EXTRACTdata extraction