7ODV

Plant peptide hormone receptor complex H1LS1

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5IXO

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5	291	0.2 M K/Na tartrate 20% w/v PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.34	63.16

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 97.332	α = 90
b = 145.878	β = 90
c = 169.539	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2019-09-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.000000	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.31	110.604	100	0.319	0.332	0.09	0.998	8.3	26		106364

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.31	2.35			3.518	3.652	0.981	0.703		26.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5IXO	2.31	110.58	106247	5326	99.984	0.256	0.2546	0.275	42.702

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
6.324			-2.049		-4.274

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.441
r_dihedral_angle_4_deg	17.709
r_dihedral_angle_other_1_deg	17.146
r_dihedral_angle_3_deg	14.653
r_lrange_it	8.16
r_lrange_other	8.159
r_scangle_it	5.918
r_scangle_other	5.918
r_dihedral_angle_1_deg	5.242
r_dihedral_angle_other_3_deg	4.957
r_mcangle_it	4.79
r_mcangle_other	4.79
r_scbond_it	3.896
r_scbond_other	3.895
r_mcbond_it	3.163
r_mcbond_other	3.163
r_angle_other_deg	1.28
r_angle_refined_deg	1.25
r_symmetry_xyhbond_nbd_refined	0.203
r_symmetry_nbd_other	0.183
r_metal_ion_refined	0.179
r_nbd_refined	0.176
r_nbd_other	0.165
r_nbtor_refined	0.155
r_symmetry_nbd_refined	0.155
r_xyhbond_nbd_refined	0.133
r_ncsr_local_group_3	0.117
r_ext_dist_refined_d	0.111
r_symmetry_nbtor_other	0.077
r_ncsr_local_group_2	0.061
r_ncsr_local_group_1	0.06
r_chiral_restr	0.056
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11809
Nucleic Acid Atoms
Solvent Atoms	362
Heterogen Atoms	624

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
PHASER	phasing