7OGO

Plant peptide hormone receptor H1I1S1

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5IXO

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5	291	0.2 M ammonium citrate pH 7.0 20 % w/v PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.4	63.84

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 98.735	α = 90
b = 146.405	β = 90
c = 169.645	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2019-10-23	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	0.999990	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.38	169.64	100	0.341	0.354	0.096	0.998	9.5	26		99190

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.38	2.42			3.662	3.809	1.043	0.669		25.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5IXO	2.38	111.083	99095	4974	99.993	0.235	0.2343	0.2476	43.014

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
5.042			-1.347		-3.695

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	40.716
r_dihedral_angle_other_1_deg	28.808
r_dihedral_angle_4_deg	14.701
r_dihedral_angle_3_deg	13.031
r_dihedral_angle_other_3_deg	6.173
r_lrange_it	5.908
r_lrange_other	5.908
r_dihedral_angle_1_deg	5.442
r_scangle_it	3.482
r_scangle_other	3.482
r_mcangle_it	2.775
r_mcangle_other	2.775
r_scbond_it	2.389
r_scbond_other	2.389
r_mcbond_it	1.705
r_mcbond_other	1.705
r_angle_other_deg	1.295
r_angle_refined_deg	1.264
r_symmetry_xyhbond_nbd_refined	0.186
r_nbd_other	0.183
r_symmetry_nbd_other	0.182
r_nbd_refined	0.174
r_nbtor_refined	0.155
r_xyhbond_nbd_refined	0.125
r_ext_dist_refined_d	0.116
r_symmetry_nbd_refined	0.112
r_symmetry_nbtor_other	0.085
r_ncsr_local_group_3	0.079
r_ncsr_local_group_1	0.063
r_ncsr_local_group_2	0.063
r_chiral_restr	0.058
r_symmetry_xyhbond_nbd_other	0.034
r_xyhbond_nbd_other	0.02
r_bond_refined_d	0.005
r_gen_planes_refined	0.004
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	11770
Nucleic Acid Atoms
Solvent Atoms	276
Heterogen Atoms	707

Software

Software
Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
Coot	model building
PHASER	phasing