7OGU

Plant peptide hormone receptor complex H1C9S1

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5IXO

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	5	291	0.2 M K/Na tartrate 20% w/v PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
3.16	61.13

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 93.962	α = 90
b = 169.894	β = 96.744
c = 143.547	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2020-02-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.000029	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.87	49.095	99.6	0.211	0.25	0.132	0.996	7.5	6.9		101500

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.87	2.92			1.684	1.995	1.061	0.54		6.7

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	5IXO	2.872	49.095	101472	5185	99.621	0.239	0.2382	0.2622	52.948

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
8.384		-0.06	-3.518		-4.72

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	41.853
r_dihedral_angle_other_1_deg	32.195
r_dihedral_angle_4_deg	16.905
r_dihedral_angle_3_deg	15.797
r_lrange_it	7.988
r_lrange_other	7.988
r_dihedral_angle_other_3_deg	6.178
r_dihedral_angle_1_deg	5.725
r_scangle_it	4.139
r_scangle_other	4.139
r_mcangle_it	3.788
r_mcangle_other	3.788
r_scbond_it	2.705
r_scbond_other	2.705
r_mcbond_it	2.333
r_mcbond_other	2.333
r_angle_refined_deg	1.308
r_angle_other_deg	1.287
r_symmetry_nbd_refined	0.225
r_symmetry_xyhbond_nbd_refined	0.221
r_nbd_other	0.208
r_symmetry_nbd_other	0.19
r_nbd_refined	0.18
r_ext_dist_refined_d	0.17
r_nbtor_refined	0.161
r_metal_ion_refined	0.152
r_xyhbond_nbd_refined	0.126
r_symmetry_nbtor_other	0.086
r_ncsr_local_group_7	0.076
r_ncsr_local_group_14	0.066
r_xyhbond_nbd_other	0.064
r_ncsr_local_group_2	0.059
r_ncsr_local_group_12	0.056
r_ncsr_local_group_9	0.054
r_ncsr_local_group_1	0.053
r_chiral_restr	0.052
r_ncsr_local_group_3	0.052
r_ncsr_local_group_13	0.052
r_ncsr_local_group_5	0.051
r_ncsr_local_group_11	0.049
r_ncsr_local_group_10	0.047
r_ncsr_local_group_8	0.046
r_ncsr_local_group_6	0.045
r_ncsr_local_group_4	0.043
r_bond_refined_d	0.006
r_gen_planes_refined	0.005
r_symmetry_xyhbond_nbd_other	0.005
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	23182
Nucleic Acid Atoms
Solvent Atoms	47
Heterogen Atoms	1147

Software

Software
Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
XDS	data reduction
Coot	model building