7QUM

ATAD2 in complex with FragLite2

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3DAI

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.163	α = 90
b = 79.163	β = 90
c = 138.226	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-07-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.976	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.5	61.42	96.8	0.077	0.081	0.024	0.999	18.2	19.9		40300

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.5	1.53			3.267	3.515	1.26	0.371		12.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.5	61.42	40253	2057	96.525	0.199	0.1973	0.2233	32.315

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.04	0.02		0.04		-0.131

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.802
r_dihedral_angle_3_deg	13.987
r_dihedral_angle_4_deg	13.562
r_lrange_other	11.668
r_lrange_it	11.629
r_scangle_other	7.577
r_scangle_it	7.559
r_scbond_it	5.244
r_scbond_other	5.241
r_dihedral_angle_1_deg	4.61
r_mcangle_it	4.203
r_mcangle_other	4.2
r_mcbond_it	2.955
r_mcbond_other	2.952
r_angle_refined_deg	1.993
r_angle_other_deg	1.527
r_symmetry_nbd_refined	0.535
r_nbd_refined	0.515
r_xyhbond_nbd_refined	0.38
r_nbd_other	0.355
r_symmetry_nbd_other	0.292
r_symmetry_xyhbond_nbd_refined	0.26
r_symmetry_xyhbond_nbd_other	0.222
r_nbtor_refined	0.178
r_chiral_restr	0.102
r_symmetry_nbtor_other	0.083
r_bond_refined_d	0.015
r_gen_planes_refined	0.011
r_xyhbond_nbd_other	0.011
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	163
Heterogen Atoms	53

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing