7QZY

ATAD2 in complex with FragLite29

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	0.1M BisTris pH 6-7, 1.7-2.1M Ammonium sulphate

Crystal Properties
Matthews coefficient	Solvent content
3.99	69.2

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 79.16	α = 90
b = 79.16	β = 90
c = 136.456	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-06-22	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.915	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.93	68.55	100	0.142	0.149	0.045	0.999	13	19.7		19756

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.93	1.98			2.784	2.945	0.955	0.66		17.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	3DAI	1.93	68.55	19675	1003	99.853	0.2	0.1973	0.2453	40.093

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.103	-0.051		-0.103		0.333

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	29.976
r_dihedral_angle_4_deg	17.396
r_dihedral_angle_3_deg	15.367
r_lrange_it	11.892
r_lrange_other	11.888
r_scangle_it	8.336
r_scangle_other	8.331
r_scbond_it	5.634
r_scbond_other	5.634
r_mcangle_it	5.252
r_mcangle_other	5.248
r_dihedral_angle_1_deg	5.175
r_mcbond_other	4.039
r_mcbond_it	4.035
r_angle_refined_deg	1.787
r_angle_other_deg	1.429
r_symmetry_nbd_refined	0.398
r_nbd_other	0.232
r_xyhbond_nbd_refined	0.224
r_symmetry_xyhbond_nbd_refined	0.222
r_nbd_refined	0.218
r_symmetry_nbd_other	0.191
r_nbtor_refined	0.175
r_chiral_restr	0.098
r_symmetry_nbtor_other	0.08
r_symmetry_xyhbond_nbd_other	0.04
r_bond_refined_d	0.012
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1084
Nucleic Acid Atoms
Solvent Atoms	118
Heterogen Atoms	63

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
Aimless	data scaling
xia2	data reduction
xia2	data scaling
PHASER	phasing