7SD4
SARS-CoV-2 Nucleocapsid N-terminal domain (N-NTD) protein
SOLID-STATE NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D CORD 25 ms | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
2 | 2D CORD 100 ms | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
3 | 2D CORD 250 ms | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
4 | 2D CORD 500 ms | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
5 | 2D NCACX 25 ms | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
6 | 2D NCOCX 25 ms | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
7 | 2D CP RFDR | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
8 | 2D hNH HETCOR | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
9 | 2D hCH HETCOR | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
10 | 3D hCANH | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
11 | 3D hCONH | 30 mg/mL [U-100% 13C; U-100% 15N] N-NTD | water | 50 mM | 6.2 | 1 atm | 298.15 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | X-PLOR NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 1000 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | CcpNmr Analysis | Stevens TJ, Fogh RH, Boucher W, Higman VA, Eisenmenger F, Bardiaux B, van Rossum BJ, Oschkinat H, Laue ED | |
4 | chemical shift assignment | NMRFAM-SPARKY | Lee W, Tonelli M, Markley JL | |
5 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
6 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |