X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP72950.1 M sodium HEPES at pH 7.0 containing 22% PEG 4000 and 3% DMSO
Crystal Properties
Matthews coefficientSolvent content
2.0239.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.98α = 90
b = 53.933β = 101.004
c = 44.738γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-02-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALBA BEAMLINE XALOC0.97625ALBAXALOC

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9848.7198.60.9877.754.8318561
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.982.193.70.3850.734.66

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7K3T1.9948.711851290099.4730.2160.2120.285949.743
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.822-1.1310.917-1.208
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.882
r_dihedral_angle_3_deg16.425
r_dihedral_angle_6_deg16.307
r_lrange_it8.494
r_lrange_other8.484
r_dihedral_angle_1_deg8.019
r_scangle_it5.894
r_scangle_other5.892
r_mcangle_other5.428
r_mcangle_it5.427
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg24.882
r_dihedral_angle_3_deg16.425
r_dihedral_angle_6_deg16.307
r_lrange_it8.494
r_lrange_other8.484
r_dihedral_angle_1_deg8.019
r_scangle_it5.894
r_scangle_other5.892
r_mcangle_other5.428
r_mcangle_it5.427
r_scbond_it4.091
r_scbond_other4.09
r_mcbond_it4.005
r_mcbond_other3.994
r_angle_refined_deg1.324
r_angle_other_deg0.733
r_nbd_other0.235
r_symmetry_nbd_other0.217
r_nbd_refined0.211
r_symmetry_nbd_refined0.2
r_nbtor_refined0.181
r_xyhbond_nbd_refined0.18
r_symmetry_xyhbond_nbd_refined0.178
r_symmetry_nbtor_other0.085
r_chiral_restr0.059
r_symmetry_xyhbond_nbd_other0.021
r_gen_planes_other0.009
r_bond_refined_d0.007
r_gen_planes_refined0.007
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2358
Nucleic Acid Atoms
Solvent Atoms60
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing