X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7XQA 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52930.1 M Tris-HCl pH8.5, 0.2 M KBr, 8 % PEG 550 MME and 8 % PEG 20000
Crystal Properties
Matthews coefficientSolvent content
3.3663.44

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.294α = 89.798
b = 108.08β = 89.976
c = 133.463γ = 96.345
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2022-08-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSRRC BEAMLINE TPS 07A1NSRRCTPS 07A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.3653099.30.0860.99317.95.1231222
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.372.45990.6310.8262.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7XQA2.36529.6722226601082394.9420.2090.20740.233441.967
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.0380.121-0.033-0.013-0.20.023
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.496
r_dihedral_angle_3_deg16.511
r_dihedral_angle_4_deg13.75
r_dihedral_angle_1_deg6.715
r_lrange_it6.629
r_lrange_other6.626
r_scangle_it4.813
r_scangle_other4.813
r_mcangle_it4.119
r_mcangle_other4.118
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg27.496
r_dihedral_angle_3_deg16.511
r_dihedral_angle_4_deg13.75
r_dihedral_angle_1_deg6.715
r_lrange_it6.629
r_lrange_other6.626
r_scangle_it4.813
r_scangle_other4.813
r_mcangle_it4.119
r_mcangle_other4.118
r_scbond_it2.968
r_scbond_other2.968
r_mcbond_it2.635
r_mcbond_other2.635
r_angle_refined_deg1.372
r_angle_other_deg1.227
r_chiral_restr0.324
r_nbd_other0.278
r_symmetry_nbd_refined0.244
r_nbd_refined0.182
r_symmetry_nbd_other0.176
r_nbtor_refined0.152
r_xyhbond_nbd_refined0.13
r_symmetry_nbtor_other0.082
r_symmetry_xyhbond_nbd_refined0.06
r_ncsr_local_group_190.03
r_ncsr_local_group_400.03
r_ncsr_local_group_40.029
r_ncsr_local_group_60.029
r_ncsr_local_group_180.029
r_ncsr_local_group_10.027
r_ncsr_local_group_50.027
r_ncsr_local_group_410.027
r_ncsr_local_group_80.026
r_ncsr_local_group_380.026
r_ncsr_local_group_200.025
r_ncsr_local_group_170.024
r_ncsr_local_group_280.024
r_ncsr_local_group_330.024
r_ncsr_local_group_150.021
r_ncsr_local_group_70.02
r_ncsr_local_group_120.02
r_ncsr_local_group_430.02
r_ncsr_local_group_160.019
r_ncsr_local_group_460.019
r_ncsr_local_group_20.018
r_ncsr_local_group_320.018
r_ncsr_local_group_140.017
r_ncsr_local_group_240.017
r_ncsr_local_group_130.016
r_ncsr_local_group_260.016
r_ncsr_local_group_370.016
r_ncsr_local_group_450.016
r_ncsr_local_group_100.015
r_ncsr_local_group_250.015
r_ncsr_local_group_440.015
r_ncsr_local_group_220.014
r_ncsr_local_group_290.014
r_ncsr_local_group_350.014
r_ncsr_local_group_420.014
r_ncsr_local_group_270.013
r_ncsr_local_group_90.011
r_ncsr_local_group_340.011
r_ncsr_local_group_30.01
r_ncsr_local_group_210.01
r_ncsr_local_group_300.01
r_ncsr_local_group_360.01
r_ncsr_local_group_310.008
r_ncsr_local_group_230.007
r_ncsr_local_group_390.007
r_bond_refined_d0.006
r_gen_planes_refined0.005
r_ncsr_local_group_110.005
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms29016
Nucleic Acid Atoms
Solvent Atoms686
Heterogen Atoms704

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
MOLREPphasing