8PFT

X-ray structure of the adduct formed upon reaction of Lysozyme with K2[Ru2(D-p-FPhF)(CO3)3] in condition A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.529320% ethylene glycol, 0.6 M NaNO3, 0.1 M NaOAc pH 4.5
Crystal Properties
Matthews coefficientSolvent content
2.0138.77

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 77.75α = 90
b = 77.75β = 90
c = 37.34γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-06-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONELETTRA BEAMLINE 11.2C1ELETTRA11.2C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.354.9899.812412.722171
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.31.3381.2730.8332.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.30454.97822171124989.8110.2050.20310.245724.978
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.003-0.0030.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.402
r_dihedral_angle_3_deg15.742
r_dihedral_angle_2_deg10.273
r_lrange_it9.527
r_lrange_other8.25
r_dihedral_angle_1_deg6.258
r_scangle_other5.701
r_scangle_it5.62
r_scbond_other3.671
r_scbond_it3.646
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.402
r_dihedral_angle_3_deg15.742
r_dihedral_angle_2_deg10.273
r_lrange_it9.527
r_lrange_other8.25
r_dihedral_angle_1_deg6.258
r_scangle_other5.701
r_scangle_it5.62
r_scbond_other3.671
r_scbond_it3.646
r_mcangle_other3.231
r_mcangle_it3.228
r_angle_refined_deg2.529
r_mcbond_it2.306
r_mcbond_other2.306
r_angle_other_deg0.59
r_nbd_refined0.244
r_symmetry_nbd_refined0.237
r_symmetry_nbd_other0.2
r_symmetry_xyhbond_nbd_refined0.197
r_xyhbond_nbd_refined0.194
r_nbtor_refined0.18
r_nbd_other0.148
r_metal_ion_refined0.123
r_chiral_restr0.086
r_symmetry_nbtor_other0.081
r_gen_planes_refined0.011
r_bond_refined_d0.01
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1001
Nucleic Acid Atoms
Solvent Atoms101
Heterogen Atoms56

Software

Software
Software NamePurpose
REFMACrefinement
autoPROCdata reduction
autoPROCdata scaling
PHASERphasing