8SF2

Crystal structure of the engineered SsoPox variant IG7


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529225% (w/v) PEG 8000 and Tris-HCl buffer (pH 8.5)
Crystal Properties
Matthews coefficientSolvent content
2.3647.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.43α = 90
b = 74.66β = 90
c = 137.47γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2017-06-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-B0.96802APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.549.2699.4126.75.6353878
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.60.977

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.549.2651168269399.420.158670.157020.18985RANDOM23.939
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.71-0.820.11
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.96
r_rigid_bond_restr7.045
r_dihedral_angle_1_deg6.116
r_long_range_B_refined5.598
r_long_range_B_other5.581
r_scangle_other4.22
r_mcangle_it4.053
r_mcangle_other4.052
r_scbond_it3.696
r_scbond_other3.695
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg13.96
r_rigid_bond_restr7.045
r_dihedral_angle_1_deg6.116
r_long_range_B_refined5.598
r_long_range_B_other5.581
r_scangle_other4.22
r_mcangle_it4.053
r_mcangle_other4.052
r_scbond_it3.696
r_scbond_other3.695
r_mcbond_it3.532
r_mcbond_other3.527
r_dihedral_angle_2_deg2.134
r_angle_refined_deg1.012
r_angle_other_deg0.421
r_chiral_restr0.056
r_bond_refined_d0.005
r_bond_other_d0.004
r_gen_planes_refined0.004
r_gen_planes_other0.002
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2507
Nucleic Acid Atoms
Solvent Atoms303
Heterogen Atoms13

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
REFMACphasing