8X0E
Human FL Metabotropic glutamate receptor 5, mGlu5-5M with agonist and PAM, W785A mutant
ELECTRON MICROSCOPY
Refinement
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| r_long_range_B_refined | 23.868 |
| r_long_range_B_other | 23.868 |
| r_dihedral_angle_3_deg | 17.5 |
| r_scangle_other | 12.759 |
| r_mcangle_it | 11.434 |
| r_mcangle_other | 11.433 |
| r_scbond_it | 7.187 |
| r_scbond_other | 7.186 |
| r_mcbond_it | 6.667 |
| r_mcbond_other | 6.667 |
| Sample |
|---|
| Thermostabilised full length human mGluR5, W785A mutant |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | Blot force was set to 0 |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 188960 |
| Reported Resolution (Å) | 3.4 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C1 |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 | ||||
| Refinement Space | RECIPROCAL | ||||
| Refinement Protocol | OTHER | ||||
| Refinement Target | |||||
| Overall B Value | 183.8 | ||||
| Fitting Procedure | |||||
| Details | |||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | FEI FALCON III (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 28.25 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TITAN KRIOS |
| Minimum Defocus (nm) | 1800 |
| Maximum Defocus (nm) | 2800 |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
| Nominal Magnification | 75000 |
| Calibrated Magnification | 130841 |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | Gautomatch | 0.56 |
| IMAGE ACQUISITION | EPU | 2.10.0.5REL |
| CTF CORRECTION | CTFFIND | 4.1.14 |
| CTF CORRECTION | RELION | 4.0.1 |
| CTF CORRECTION | cryoSPARC | 4.3.0 |
| MODEL FITTING | UCSF Chimera | 1.15 |
| MODEL FITTING | Coot | 0.9.8.7 |
| INITIAL EULER ASSIGNMENT | RELION | 4.0.1 |
| FINAL EULER ASSIGNMENT | cryoSPARC | 4.3.0 |
| RECONSTRUCTION | cryoSPARC | 4.3.0 |
| MODEL REFINEMENT | PHENIX | 1.20.1-4487 |
| MODEL REFINEMENT | REFMAC | 5.8.0411 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 783666 | The particles were extract from two batches of data collection | ||
