Ligand validation:2YP1

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 2YP1 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2YP1_NAG_D_411	51%	64%	0.17	0.923	0.55	0.83	-	-	0	0	100%	0.9333
2YP1_NAG_D_391	25%	48%	0.253	0.89	0.54	1.45	-	4	0	0	100%	0.9333
2YP1_NAG_D_381	14%	65%	0.248	0.797	0.65	0.7	-	-	0	0	100%	0.9333
2YP1_NAG_C_381	13%	48%	0.328	0.871	0.63	1.37	-	2	1	0	100%	0.9333
6EL0_NAG_A_407	96%	56%	0.062	0.973	0.47	1.22	-	1	0	0	100%	0.9333
5OY1_NAG_A_407	95%	65%	0.063	0.965	0.4	0.94	-	1	0	0	100%	0.9333
6EKZ_NAG_A_407	94%	65%	0.066	0.965	0.44	0.9	-	1	0	0	100%	0.9333
6EL4_NAG_A_407	94%	63%	0.065	0.964	0.41	0.98	-	1	0	0	100%	0.9333
5OY2_NAG_A_1006	94%	62%	0.067	0.964	0.42	1	-	1	0	0	100%	0.9333
3PPS_NAG_B_760	100%	44%	0.028	0.993	0.57	1.57	-	3	0	0	100%	0.9333
4AKM_NAG_A_1379	100%	67%	0.029	0.994	0.54	0.73	-	-	0	0	100%	0.9333
3RIK_NAG_D_509	100%	8%	0.035	0.991	2.03	2.54	4	7	2	0	100%	0.9333
5VEM_NAG_B_509	100%	74%	0.003	0.957	0.46	0.56	-	-	0	0	100%	0.9333
1OC7_NAG_A_500	100%	60%	0.04	0.991	0.61	0.9	-	1	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.