Ligand validation:3E25

UDP: URIDINE-5'-DIPHOSPHATE

UDP is a Ligand Of Interest in 3E25 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
3E25_UDP_A_339	39%	5%	0.222	0.928	3.32	2.06	8	12	6	0	100%	0.66
5JUC_UDP_A_401	81%	76%	0.103	0.956	0.46	0.49	-	1	0	0	100%	1
5JT0_UDP_A_402	76%	72%	0.118	0.955	0.5	0.58	-	-	1	0	100%	0.92
4DEC_UDP_A_401	75%	31%	0.098	0.932	1.03	1.7	1	7	0	0	100%	1
5JUD_UDP_A_401	5%	4%	0.393	0.794	3.85	1.81	12	9	1	0	100%	0.48
4DE7_UDP_A_401	1%	29%	0.499	0.752	0.8	2	-	6	0	0	64%	0.3776
8X3Q_UDP_C_401	100%	3%	0.015	0.998	3.32	2.69	13	13	0	0	100%	1
8X3U_UDP_B_401	100%	3%	0.012	0.999	3.31	2.68	13	13	2	0	100%	1
8VH8_UDP_C_704	100%	62%	0.032	0.995	0.55	0.9	-	1	0	0	100%	1
2B69_UDP_A_900	100%	42%	0.032	0.992	1.03	1.21	2	4	0	0	100%	1
4GYW_UDP_C_1101	100%	37%	0.037	0.988	1.03	1.45	2	4	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.