CDP: CYTIDINE-5'-DIPHOSPHATE
CDP is a Ligand Of Interest in 3GPA designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3GPA_CDP_C_201 | 85% | 61% | 0.117 | 0.982 | 0.76 | 0.75 | 1 | - | 1 | 0 | 100% | 1 |
3GPA_CDP_B_201 | 85% | 58% | 0.112 | 0.976 | 0.81 | 0.82 | - | - | 4 | 0 | 100% | 1 |
3GPA_CDP_E_201 | 84% | 59% | 0.108 | 0.969 | 0.77 | 0.79 | - | - | 1 | 0 | 100% | 1 |
3GPA_CDP_D_201 | 77% | 56% | 0.128 | 0.968 | 0.83 | 0.86 | - | - | 1 | 0 | 100% | 1 |
3GPA_CDP_A_201 | 76% | 46% | 0.131 | 0.969 | 0.83 | 1.24 | 1 | 2 | 2 | 0 | 100% | 1 |
3GPA_CDP_F_201 | 69% | 50% | 0.138 | 0.953 | 0.81 | 1.12 | - | 3 | 2 | 0 | 100% | 1 |
3EE3_CDP_E_164 | 90% | 51% | 0.082 | 0.966 | 0.79 | 1.1 | - | 4 | 0 | 0 | 100% | 1 |
6SDK_CDP_C_301 | 100% | 5% | 0.043 | 0.987 | 3.72 | 1.58 | 12 | 6 | 0 | 0 | 100% | 1 |
3BOS_CDP_B_300 | 100% | 55% | 0.046 | 0.988 | 0.92 | 0.81 | 1 | 1 | 0 | 0 | 100% | 1 |
8VHP_CDP_D_809 | 98% | 52% | 0.051 | 0.975 | 0.89 | 0.96 | - | 2 | 2 | 0 | 100% | 1 |
2VBU_CDP_A_1133 | 96% | 45% | 0.078 | 0.989 | 0.89 | 1.22 | - | 3 | 0 | 0 | 100% | 1 |
1ORR_CDP_B_1301 | 96% | 34% | 0.06 | 0.97 | 1.28 | 1.32 | 3 | 6 | 0 | 0 | 100% | 1 |