UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3HE3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3HE3_UDP_G_400 | 85% | 36% | 0.118 | 0.985 | 0.94 | 1.55 | 1 | 7 | 0 | 0 | 100% | 1 |
3HE3_UDP_B_400 | 85% | 36% | 0.116 | 0.981 | 0.95 | 1.57 | 1 | 6 | 0 | 0 | 100% | 1 |
3HE3_UDP_H_400 | 84% | 36% | 0.117 | 0.981 | 0.95 | 1.54 | - | 6 | 0 | 0 | 100% | 1 |
3HE3_UDP_F_400 | 83% | 36% | 0.111 | 0.969 | 0.93 | 1.58 | - | 6 | 0 | 0 | 100% | 1 |
3HE3_UDP_C_400 | 82% | 36% | 0.124 | 0.98 | 0.95 | 1.54 | - | 6 | 0 | 0 | 100% | 1 |
3HE3_UDP_I_400 | 79% | 36% | 0.134 | 0.981 | 0.94 | 1.57 | 1 | 7 | 0 | 0 | 100% | 1 |
3HE3_UDP_J_400 | 75% | 35% | 0.149 | 0.983 | 0.96 | 1.58 | - | 6 | 0 | 0 | 100% | 1 |
3HE3_UDP_A_400 | 74% | 37% | 0.147 | 0.977 | 0.94 | 1.51 | - | 6 | 2 | 0 | 100% | 1 |
3HE3_UDP_D_400 | 72% | 36% | 0.15 | 0.976 | 0.95 | 1.56 | - | 7 | 0 | 0 | 100% | 1 |
3HE3_UDP_E_400 | 69% | 38% | 0.158 | 0.973 | 0.93 | 1.5 | - | 5 | 1 | 0 | 100% | 1 |
3MJ4_UDP_C_500 | 68% | 34% | 0.145 | 0.956 | 0.86 | 1.72 | 1 | 6 | 0 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |