Ligand validation:4DW5


U5P: URIDINE-5'-MONOPHOSPHATE

U5P is a Ligand Of Interest in 4DW5 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4DW5_U5P_B_207Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4DW5_U5P_B_207Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4DW5_U5P_B_207Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4DW5_U5P_B_207 1% 0% 0.314 0.6196.62 7.09 8 102043%0.4286
4DW4_U5P_A_1118 90% 29% 0.072 0.9561.07 1.76 2 1100100%1
3G1X_U5P_A_229 100% 48% 0.021 0.9961.08 0.92 1 200100%1
6YWU_U5P_A_501 100% 40% 0.036 0.9941.2 1.13 2 100100%1
2E6Y_U5P_B_302 100% 49% 0.04 0.9931.11 0.85 1 110100%1
6ZWY_U5P_A_501 100% 44% 0.048 0.9940.99 1.17 1 100100%1
3G22_U5P_B_229 99% 49% 0.042 0.981.08 0.91 2 200100%1