Ligand validation:4GDJ

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 4GDJ designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4GDJ_NAG_A_506	19%	69%	0.211	0.802	0.46	0.73	-	-	0	0	100%	0.9333
4GDJ_NAG_C_505	13%	54%	0.292	0.83	0.42	1.34	-	1	0	0	100%	0.9333
4GDJ_NAG_B_505	10%	65%	0.345	0.857	0.57	0.76	-	-	0	0	100%	0.9333
4GDJ_NAG_A_505	6%	54%	0.357	0.802	0.56	1.19	-	1	0	0	100%	0.9333
4GDJ_NAG_D_505	4%	63%	0.304	0.682	0.55	0.87	-	-	0	0	100%	0.9333
4GDJ_NAG_B_506	3%	62%	0.354	0.694	0.53	0.91	-	1	0	0	100%	0.9333
4GEZ_NAG_C_502	100%	57%	0.027	0.988	0.6	1.03	-	1	1	0	100%	0.9333
4FVK_NAG_B_505	46%	50%	0.17	0.906	0.36	1.55	-	5	0	0	100%	0.9333
4GDI_NAG_D_504	34%	49%	0.183	0.864	0.54	1.39	-	1	0	0	100%	0.9333
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	0	100%	0.9333
3PPS_NAG_B_760	100%	44%	0.028	0.993	0.57	1.57	-	3	0	0	100%	0.9333
5O59_NAG_A_601	100%	70%	0.024	0.993	0.3	0.85	-	-	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.