Ligand validation:6D5R

XYP: beta-D-xylopyranose

XYP is a Ligand Of Interest in 6D5R designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
6D5R_XYP_A_408	24%	28%	0.178	0.805	1.85	1.04	3	1	0	0	100%	0.923
6D5R_XYP_A_409	21%	26%	0.188	0.798	1.93	1.11	3	1	0	0	100%	1
6D5R_XYP_A_410	9%	35%	0.233	0.722	1.96	0.63	3	-	0	0	100%	0.914
6D5R_XYP_A_411	5%	31%	0.324	0.738	1.88	0.9	3	-	1	0	100%	1
5UUB_XYP_A_419	71%	22%	0.093	0.913	2.11	1.14	2	-	0	0	100%	0.837
6N4W_XYP_A_414	69%	36%	0.118	0.933	1.76	0.79	3	-	0	0	100%	0.781
5UN3_XYP_A_355	63%	28%	0.108	0.901	1.98	0.94	2	1	1	0	100%	0.876
6N4Z_XYP_A_413	60%	40%	0.127	0.913	1.81	0.55	3	-	0	0	100%	0.776
5UUA_XYP_A_416	59%	36%	0.125	0.906	1.54	0.98	1	1	0	0	100%	0.86
1OD8_XYP_A_1311	100%	64%	0.047	0.992	0.75	0.64	-	-	0	0	100%	1
1V0M_XYP_A_1304	100%	71%	0.035	0.993	0.82	0.33	-	-	0	0	90%	0.9
8Y00_XYP_D_201	99%	28%	0.032	0.986	0.63	2.19	-	7	1	0	90%	0.9
2WYS_XYP_A_1001	99%	38%	0.052	0.983	0.69	1.7	-	4	3	0	100%	1
1V0N_XYP_A_1306	98%	60%	0.048	0.989	0.76	0.78	-	-	0	0	90%	0.9

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.